From: Reproducibility and reliability assays of the gene expression-measurements
 | Uncorrected data | After quantile correction | ||||||
---|---|---|---|---|---|---|---|---|
Experiment a | Average number of genes with >50% inter-replicate variation | r (P) b | Slope c | A.D d % | Average number of genes with >50% inter-replicate variation | r (P) b | Slope c | A.D d % |
E-GEOD-53990: Arabidopsis data with 6 treatments and 3 replicates | 8488/22810 (37%) | 0.975 | 0.804 | 91% | 2000/22810 (8.8%) | 0.980 | 0.982 | 26% |
E-GEOD-27822: Barley data with 2 treatments and 3 replicates | 6433/22840 (28%) | 0.992 | 1.22 | 34% | 519/22840 (2.3%) | 0.994 | 0.992 | 8.2% |
E-GEOD-39950: Yeast data with 2 treatments and 3 replicates | 1645/10928 (15%) | 0.997 | 1.257 | 26% | 396/10928 (3.6%) | 0.997 | 0.980 | 12% |
E-GEOD-49918: E. coli data with 4 treatments and 3 replicates | 1059/10208 (10%) | 0.996 | 1.032 | 28% | 299/10208 (2.9%) | 0.997 | 0.981 | 10% |
E-GEOD-24524: E. coli data with 4 treatments and 2 replicates | 837/10208 (8.2%) | 0.995 | 0.999 | 22% | 300/1028 (2.9%) | 0.996 | 0.990 | 15% |