Name of resource | What it does | URL |
---|---|---|
BicOverlapper | Visualisation of biclusters combined with profile plots and heat maps | |
BiGGEsTS | Heat map-based bicluster visualisation | |
Brain Explorer | Visualisation of 3D transcription data in the central nervous system | |
Data Matrix Viewer | Simple profile plot visualisation; supports Gaggle | |
EXPANDER | Heat maps, scatter plots and profile plots of cluster averages | |
GENESIS | Analysis suite; offers several interactive visualisations | |
geWorkbench | Modular suite; heat maps, dendrograms, profile and scatter plots | |
Hierarchical Clustering Explorer | Linked heat map, profile and scatter plots; systematic exploration | |
Java TreeView | Linked heat maps, karyoscopes, sequence alignments, scatter plots | |
Mayday | Modular suite; many linked visualisations; enhanced heat map113 | |
MultiExperiment Viewer | Analysis suite; heat maps, dendrograms, profile and scatter plots | |
PointCloudXplore | Visualisation of 3D transcription data in Drosophila embryos | |
TimeSearcher | Exploration and analysis of time series; advanced profile plots | |
R/BioConductor Geneplotter | Karyoscope-style plots and other visualisations | |
GenePattern | Modular analysis platform; several visualisation modules available | |
Cytoscape | Open source software platform for visualizing molecular interaction networks and biological pathways and integrating these networks with annotations, gene expression profiles and other state data |