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Table 2 Assembly quality of both SLH-control and SLH-treated S. linearistipularis

From: NaCl stress-induced transcriptomics analysis of Salix linearistipularis (syn. Salix mongolica)

Assembly quality

SLH-control contig

SLH-treated contig

SLH-control unigene

SLH-treated unigene

ALL unigene

Total number

109,567

108,481

60,263

60,021

53,362

Mean length(nt)

355

352

684

653

871

Total length(nt)

38,859,749

38,194,206

41,232,369

39,191,396

46,456,642

N50

645

640

1146

1080

1339

Total consensus sequences

  

60,263

60,021

53,362

Distinct clusters

  

23,715

22,999

25,298

Distinct singletons

  

36,548

37,022

28,064

  1. Where N50 is 50 % of the assembled bases were incorporated into sequences with length of N50 or longer