Skip to main content

Table 2 Assembly quality of both SLH-control and SLH-treated S. linearistipularis

From: NaCl stress-induced transcriptomics analysis of Salix linearistipularis (syn. Salix mongolica)

Assembly quality SLH-control contig SLH-treated contig SLH-control unigene SLH-treated unigene ALL unigene
Total number 109,567 108,481 60,263 60,021 53,362
Mean length(nt) 355 352 684 653 871
Total length(nt) 38,859,749 38,194,206 41,232,369 39,191,396 46,456,642
N50 645 640 1146 1080 1339
Total consensus sequences    60,263 60,021 53,362
Distinct clusters    23,715 22,999 25,298
Distinct singletons    36,548 37,022 28,064
  1. Where N50 is 50 % of the assembled bases were incorporated into sequences with length of N50 or longer