NaCl stress-induced transcriptomics analysis of Salix linearistipularis (syn. Salix mongolica)

Nan, Guixian; Zhang, Yan; Li, Song; Lee, Imshik; Takano, Tetsuo; Liu, Shenkui

doi:10.1186/s40709-016-0038-7

Journal of Biological Research-Thessaloniki

Table 4 Twenty-two overlapped pathways that have no DEG level in S. linearistipularis but DEG level at more than 1.5-fold in Arabidopsis sp.

From: NaCl stress-induced transcriptomics analysis of Salix linearistipularis (syn. Salix mongolica)

Pathway	GeneID	Gene annotation	SLH-control	SLH-treated	Log₂ (treated/control)	FDR
Proteasome	CL3345.Contig2	26S protease regulatory subunit	59.8522	72.6467	0.2795	0.000426
	CL7794.Contig1	26S protease regulatory subunit	99.0566	112.3448	0.1816	0.007457
	CL2535.Contig2	predicted protein	39.0475	46.8721	0.2635	0.00905
	CL7718.Contig2	Proteasome subunit beta type-2	47.5126	70.1633	0.5624	8.89 × 10⁻⁰⁸
	CL3715.Contig2	26S proteasome non-ATPase regulatory subunit	16.6796	22.5668	0.4361	0.00345
	CL7840.Contig2	26S proteasome non-ATPase regulatory subunit	74.8551	88.6333	0.2437	0.00946
Protein export	Unigene11088	Cell division protein FtsY homolog	17.7825	12.6174	−0.495	0.007987
Protein export	CL7191.Contig1	Signal recognition particle 54 kDaprotein	22.6598	17.5094	−0.372	0.004058
Beta-Alanine metabolism	Unigene18351	Isovaleryl-CoA dehydrogenase 1	80.617	92.5123	0.1986	9.1 × 10⁻⁰⁵
	Unigene2254	N-carbamoylputrescineamidase	55.0139	68.1933	0.3098	0.000129
RNA degradation	Unigene13605	Enhancer of mRNA-decapping protein	30.479	24.9409	−0.2893	5.27 × 10⁻⁰⁵
RNA degradation	CL7185.Contig2	predicted protein	24.2334	16.6728	−0.5395	0.001459
Pantothenate and CoA biosynthesis	Unigene2254	N-carbamoylputrescineamidase	55.0139	68.1933	0.3098	0.000129
Pantothenate and CoA biosynthesis	CL5521.Contig2	Ketol-acid reductoisomerase	68.8746	58.4374	−0.2371	0.000509
Metabolism of xenobiotics by cytochrome P450	CL1909.Contig1	Alcohol dehydrogenase class-3	125.939	177.1319	0.4921	9.59 × 10⁻³⁰
Lysine biosynthesis	CL6463.Contig1	Alpha-aminoadipicsemialdehyde synthase	27.7034	38.3763	0.4702	1.67 × 10⁻¹¹
	Unigene8491	Diaminopimelate decarboxylase 2	53.4166	62.6334	0.2296	0.005103
	CL3845.Contig2	Diaminopimelateepimerase	50.2853	60.5122	0.2671	0.003409
Lysine degradation	CL6463.Contig1	Alpha-aminoadipicsemialdehyde synthase	27.7034	38.3763	0.4702	1.67 × 10⁻¹¹
Arginine and proline metabolism	CL8463.Contig2	Glutamate dehydrogenase 1	44.4049	56.5985	0.35	0.001105
Porphyrin and chlorophyll metabolism	CL646.Contig5	Glutamyl-tRNAreductase 1	13.3057	9.1201	−0.5449	0.001246
Histidine metabolism	Unigene9767	Imidazole glycerol phosphate synthase hisHF	32.2903	25.6821	−0.3303	0.001729
One carbon pool by folate	CL2146.Contig1	Serine hydroxymethyltransferase	70.804	86.6454	0.2913	8.51 × 10⁻⁰⁷
	CL6648.Contig1	Serine hydroxymethyltransferase	180.7253	259.5866	0.5224	7.49 × 10⁻⁵⁵
	Unigene11248	Serine hydroxymethyltransferase	40.4825	49.1695	0.2805	0.00285
SNARE interactions in vesicular transport	CL1271.Contig1	VAMP-like protein	33.3667	42.716	0.3564	0.009107
SNARE interactions in vesicular transport	CL5949.Contig2	Vesicle transport v-SNARE	27.6954	40.8223	0.5597	0.000616
Caffeine metabolism	Unigene483	Xanthine dehydrogenase	23.2954	29.0532	0.3187	1.03 × 10⁻⁰⁵
Tropane, piperidine and pyridine alkaloid biosynthesis	CL140.Contig1	Phenylalanine ammonia-lyase	153.4218	229.943	0.5838	5.89 × 10⁻⁰⁸
Tropane, piperidine and pyridine alkaloid biosynthesis	CL140.Contig3	Phenylalanine ammonia-lyase	386.8141	418.3274	0.113	6.97 × 10⁻⁰⁶
Glycine, serine and threonine metabolism	Unigene11172	D-3-phosphoglycerate dehydrogenase	68.4341	83.2202	0.2822	2.51 × 10⁻⁰⁶
	Unigene11248	Serine hydroxymethyltransferase	40.4825	49.1695	0.2805	0.00285
	CL2146.Contig1	Serine hydroxymethyltransferase	70.804	86.6454	0.2913	8.51 × 10⁻⁰⁷
	Unigene18435	Threonine dehydratase biosynthetic	97.1851	130.6801	0.4272	3.98 × 10⁻²⁴
	CL6648.Contig1	Serine hydroxymethyltransferase	180.7253	259.5866	0.5224	7.49 × 10⁻⁵⁵
Spliceosome	CL1782.Contig1	predicted protein	27.796	19.9794	−0.4764	1.03 × 10⁻¹⁷
	Unigene3088	predicted protein	79.8566	95.1218	0.2524	0.003244
	Unigene15805	Protein pleiotropic regulatory locus	40.8867	31.9293	−0.3568	8.01 × 10⁻⁰⁵
	CL1939.Contig3	heat shock 70 kDa	41.4488	52.1506	0.3314	9.96 × 10⁻⁰⁶
	Unigene5315	predicted protein	34.3227	47.38	0.4651	0.001735
Fatty acid biosynthesis	CL1034.Contig2	Acetyl-CoA carboxylase 1	19.096	16.5839	−0.2035	0.008148
DNA replication	Unigene2892	Proliferating cell nuclear antigen	26.9745	35.3695	0.3909	0.006219
Base excision repair	Unigene2892		26.9745	35.3695	0.3909	0.006219
Mismatch repair	Unigene2892		26.9745	35.3695	0.3909	0.006219
Natural killer cell mediated cytotoxicity	CL3893.Contig3	Mitogen-activated protein kinase 3	180.9353	136.4617	−0.407	2.54 × 10⁻¹⁷

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ISSN: 2241-5793

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