Skip to main content

Table 4 Twenty-two overlapped pathways that have no DEG level in S. linearistipularis but DEG level at more than 1.5-fold in Arabidopsis sp.

From: NaCl stress-induced transcriptomics analysis of Salix linearistipularis (syn. Salix mongolica)

Pathway GeneID Gene annotation SLH-control SLH-treated Log2 (treated/control) FDR
Proteasome CL3345.Contig2 26S protease regulatory subunit 59.8522 72.6467 0.2795 0.000426
CL7794.Contig1 26S protease regulatory subunit 99.0566 112.3448 0.1816 0.007457
CL2535.Contig2 predicted protein 39.0475 46.8721 0.2635 0.00905
CL7718.Contig2 Proteasome subunit beta type-2 47.5126 70.1633 0.5624 8.89 × 10−08
CL3715.Contig2 26S proteasome non-ATPase regulatory subunit 16.6796 22.5668 0.4361 0.00345
CL7840.Contig2 26S proteasome non-ATPase regulatory subunit 74.8551 88.6333 0.2437 0.00946
Protein export Unigene11088 Cell division protein FtsY homolog 17.7825 12.6174 −0.495 0.007987
CL7191.Contig1 Signal recognition particle 54 kDaprotein 22.6598 17.5094 −0.372 0.004058
Beta-Alanine metabolism Unigene18351 Isovaleryl-CoA dehydrogenase 1 80.617 92.5123 0.1986 9.1 × 10−05
  Unigene2254 N-carbamoylputrescineamidase 55.0139 68.1933 0.3098 0.000129
RNA degradation Unigene13605 Enhancer of mRNA-decapping protein 30.479 24.9409 −0.2893 5.27 × 10−05
CL7185.Contig2 predicted protein 24.2334 16.6728 −0.5395 0.001459
Pantothenate and CoA biosynthesis Unigene2254 N-carbamoylputrescineamidase 55.0139 68.1933 0.3098 0.000129
CL5521.Contig2 Ketol-acid reductoisomerase 68.8746 58.4374 −0.2371 0.000509
Metabolism of xenobiotics by cytochrome P450 CL1909.Contig1 Alcohol dehydrogenase class-3 125.939 177.1319 0.4921 9.59 × 10−30
Lysine biosynthesis CL6463.Contig1 Alpha-aminoadipicsemialdehyde synthase 27.7034 38.3763 0.4702 1.67 × 10−11
Unigene8491 Diaminopimelate decarboxylase 2 53.4166 62.6334 0.2296 0.005103
CL3845.Contig2 Diaminopimelateepimerase 50.2853 60.5122 0.2671 0.003409
Lysine degradation CL6463.Contig1 Alpha-aminoadipicsemialdehyde synthase 27.7034 38.3763 0.4702 1.67 × 10−11
Arginine and proline metabolism CL8463.Contig2 Glutamate dehydrogenase 1 44.4049 56.5985 0.35 0.001105
Porphyrin and chlorophyll metabolism CL646.Contig5 Glutamyl-tRNAreductase 1 13.3057 9.1201 −0.5449 0.001246
Histidine metabolism Unigene9767 Imidazole glycerol phosphate synthase hisHF 32.2903 25.6821 −0.3303 0.001729
One carbon pool by folate CL2146.Contig1 Serine hydroxymethyltransferase 70.804 86.6454 0.2913 8.51 × 10−07
  CL6648.Contig1 Serine hydroxymethyltransferase 180.7253 259.5866 0.5224 7.49 × 10−55
  Unigene11248 Serine hydroxymethyltransferase 40.4825 49.1695 0.2805 0.00285
SNARE interactions in vesicular transport CL1271.Contig1 VAMP-like protein 33.3667 42.716 0.3564 0.009107
CL5949.Contig2 Vesicle transport v-SNARE 27.6954 40.8223 0.5597 0.000616
Caffeine metabolism Unigene483 Xanthine dehydrogenase 23.2954 29.0532 0.3187 1.03 × 10−05
Tropane, piperidine and pyridine alkaloid biosynthesis CL140.Contig1 Phenylalanine ammonia-lyase 153.4218 229.943 0.5838 5.89 × 10−08
CL140.Contig3 Phenylalanine ammonia-lyase 386.8141 418.3274 0.113 6.97 × 10−06
Glycine, serine and threonine metabolism Unigene11172 D-3-phosphoglycerate dehydrogenase 68.4341 83.2202 0.2822 2.51 × 10−06
Unigene11248 Serine hydroxymethyltransferase 40.4825 49.1695 0.2805 0.00285
CL2146.Contig1 Serine hydroxymethyltransferase 70.804 86.6454 0.2913 8.51 × 10−07
Unigene18435 Threonine dehydratase biosynthetic 97.1851 130.6801 0.4272 3.98 × 10−24
CL6648.Contig1 Serine hydroxymethyltransferase 180.7253 259.5866 0.5224 7.49 × 10−55
Spliceosome CL1782.Contig1 predicted protein 27.796 19.9794 −0.4764 1.03 × 10−17
Unigene3088 predicted protein 79.8566 95.1218 0.2524 0.003244
Unigene15805 Protein pleiotropic regulatory locus 40.8867 31.9293 −0.3568 8.01 × 10−05
CL1939.Contig3 heat shock 70 kDa 41.4488 52.1506 0.3314 9.96 × 10−06
Unigene5315 predicted protein 34.3227 47.38 0.4651 0.001735
Fatty acid biosynthesis CL1034.Contig2 Acetyl-CoA carboxylase 1 19.096 16.5839 −0.2035 0.008148
DNA replication Unigene2892 Proliferating cell nuclear antigen 26.9745 35.3695 0.3909 0.006219
Base excision repair Unigene2892   26.9745 35.3695 0.3909 0.006219
Mismatch repair Unigene2892   26.9745 35.3695 0.3909 0.006219
Natural killer cell mediated cytotoxicity CL3893.Contig3 Mitogen-activated protein kinase 3 180.9353 136.4617 −0.407 2.54 × 10−17