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Table 2 Sites under positive selection according to six different methods in the three mitochondrial coding genes

From: Host species and pathogenicity effects in the evolution of the mitochondrial genomes of Eimeria species (Apicomplexa; Coccidia; Eimeriidae)

  Site Amino acid replacements Aminoacid change PAML
SLAC REL FEL MEME FUBAR Branch-sites
COX1 3 Y; S (2, 12, 14, 21, 22, 23, 24); P (15) x x
177 T, A (19) E. mitis
199 G; L (2, 6, 7, 14, 15); V (1); A (5, 10) x x
363 T; S (5, 9, 13, 25) x
365 V; L (2, 6, 7, 14, 18, 21, 23, 24) x x
415 S; I (12) x
457 V; I (9, 12) x
COX3 82 S; C (3, 17, 18, 19, 20, 21); A (16) x
135 I; V (17, 18, 19, 20) E. mitis
145 A; S (16, 22, 24, 25) x
208 T; V (2, 6, 7, 14, 24, 25), P (1, 5, 9, 10, 11, 13, 14); A (4, 8); L (12) x x
218 S; N (3) E. brunetti
CYTB 131 F, Y (12) x
185 F, Y (10) x
264 Y; N (10) x x E. mitis
347 V; L (9, 11, 13, 25); A (1, 12, 21); I (3); G (10), T (15) x x x
  1. List of amino acid replacements fixed within mtDNA lineages of Eimeria species (for species names see Table 1)