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Table 2 List of primers, their sequence, annealing temperature and amplification pattern used for PCR optimization

From: Genetic diversity analysis of cultivated Korarima [Aframomum corrorima (Braun) P.C.M. Jansen] populations from southwestern Ethiopia using inter simple sequence repeats (ISSR) marker

 

Primer

Primer sequences

Annealing temperature (°C)

Amplification pattern

1

UBC-810

(CA)8T

45

No band

2

UBC-811

(CA) 8 RC

48

Very good

3

UBC-813

(GATA)8

45

Fair

4

UBC-814

(AT)8YC

45

No band

5

UBC-815

(GA)8YT

48

Fair

6

UBC-817

(GT)8YA

45

Fair

7

UBC-822

(GT)8YC

45

No band

8

UBC-825

(AT) 8 T

45

Very good

9

UBC-831

(AT)8YA

48

No band

10

UBC-834

(AG) 8 YT

45

Excellent

11

UBC-835

(AG) 8 YC

48

Excellent

12

UBC-841

(GA) 8 YC

48

Excellent

13

UBC-843

(CT)8RA

45

Fair

14

UBC-846

(CA)8RT

48

No band

15

UBC-849

(GT)8YA

45

No band

16

UBC-850

(GT)8YC

48

Fair

17

UBC-853

(TC) 8 RT

48

Good

18

UBC-857

(AC) 8 YG

45

Very good

  1. ISSR primers (UBC 1–18) were from the University of British Columbia, Canada. The seven primers used in the present study for PCR amplification are highlighted in italics