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Table 1 List of software tools for selective sweep detection

From: A survey of methods and tools to detect recent and strong positive selection

 

Method

Implementation

Availability (source code, web service)

SweepFinder (2005)

SFS

Sequential

http://people.binf.ku.dk/rasmus/webpage/sf.html, –

OmegaPlus (2012)

LD

Parallel

https://github.com/alachins/omegaplus , http://pop-gen.eu

SweeD (2013)

SFS

Parallel

https://github.com/alachins/sweed , http://pop-gen.eu

SweepFinder2 (2016)

SFS

Sequential

http://www.personal.psu.edu/mxd60/sf2.html, –