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Table 1 List of cDNA datasets

From: Genome wide meta-analysis of cDNA datasets reveals new target gene signatures of colorectal cancer based on systems biology approach

Accession No. Total samples Tissues Species Conditions/type Platform Size of arrays AffyIDs References
GSE 9412 6 Colorectal cancer Homo sapiens Sensitive vs resistant GPL571 [HG-U133A_2] Affymetrix Human Genome U133A 2.0 Array 732x732 features 22277 Selga et al. [34]
GSE 11440 6 Colon Homo sapiens Sensitive vs resistant GPL570 [HG-U133_Plus_2] U133 Plus 2.0 Array 1164x1164 features 54675 Mencia et al. [35]
GSE14773 8 Colon Homo sapiens Control vs treated GPL570 [HG-U133_Plus_2] U133 Plus 2.0 Array 1164x1164 features 54675 Hwang et al. [36]
GSE 15102 8 Colon Homo sapiens Control vs treated GPL571 [HG-U133A_2] Affymetrix Human Genome U133A 2.0 Array 732x732 features 22277 Sagiv et al. [37]
GSE 18560 12 Colorectal Homo sapiens Control vs treated GPL570 [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array 1164x1164 features 54675 Selga et al. [34]
GSE 27157 10 Colorectal cancer Homo sapiens p53 wild vs. tumor samples GPL570 [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array 1164x1164 features 54675 Katkoori et al. [38]
GSE 29316 6 Colon fibroblast Homo sapiens Control vs treated GPL570 [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array 1164x1164 features 54675 Chen et al. [39]
GSE 32323 44 Colorectal cancer Homo sapiens Control vs Treated GPL570 [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array 1164x1164 features 54675 Khamas et al. [40]
GSE 35144 64 Colorect cancer Homo sapiens Case vs control GPL570 [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array 1164x1164 features 54675 Uronis et al. [41]
GSE 55624 18 Colorectal cancer Homo sapiens Control vs treated GPL570 [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array 1164x1164 features 54675 Schoumacher et al. [42]
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Journal of Biological Research-Thessaloniki

ISSN: 2241-5793

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